Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf2125 | CLV88_102444 | Not Available | Positive | 1255886 - 1257388 | 52754.4 |
| microcin-processing peptidase 1 | CLV88_102445 | Not Available | Positive | 1257503 - 1258849 | 47201.3 |
| myo-inositol-1(or 4)-monophosphatase | CLV88_102446 | Not Available | Positive | 1258836 - 1259609 | 27847.0 |
| gmp synthase (glutamine-hydrolysing) | CLV88_102447 | Not Available | Negative | 1259610 - 1260347 | 27149.5 |
| 3-deoxy-d-manno-octulosonic-acid transferase | CLV88_102448 | Not Available | Positive | 1260492 - 1261715 | 45045.3 |
| lipid-a-disaccharide kinase | CLV88_102449 | Not Available | Positive | 1261712 - 1262719 | 36150.4 |
| protein-disulfide isomerase | CLV88_102450 | Not Available | Negative | 1262767 - 1263459 | 25228.8 |
| hypothetical protein | CLV88_102451 | Not Available | Negative | 1263460 - 1263975 | 18573.3 |
| a/g-specific dna-adenine glycosylase | CLV88_102452 | Not Available | Positive | 1264062 - 1265120 | 39247.1 |
| alkane 1-monooxygenase | CLV88_102453 | Not Available | Positive | 1265184 - 1266317 | 44048.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
