Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein ompu | CLV88_102434 | Not Available | Negative | 1244712 - 1245632 | 31106.2 |
| uncharacterized protein duf3576 | CLV88_102435 | Not Available | Positive | 1245949 - 1246425 | 16865.1 |
| glycosyltransferase involved in cell wall biosynthesis | CLV88_102436 | Not Available | Negative | 1246510 - 1247769 | 47888.7 |
| leucyl-trna synthetase | CLV88_102437 | Not Available | Positive | 1247955 - 1250513 | 95233.7 |
| lps-assembly lipoprotein | CLV88_102438 | Not Available | Positive | 1250500 - 1251003 | 17854.9 |
| dna polymerase iii delta subunit | CLV88_102439 | Not Available | Positive | 1251000 - 1252025 | 37431.9 |
| glutathione s-transferase | CLV88_102440 | Not Available | Positive | 1252141 - 1252731 | 22095.9 |
| hypothetical protein | CLV88_102441 | Not Available | Negative | 1252794 - 1253948 | 41358.2 |
| enoyl-coa hydratase/carnithine racemase | CLV88_102442 | Not Available | Negative | 1254373 - 1254984 | 21110.8 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | CLV88_102443 | Not Available | Negative | 1254981 - 1255733 | 26058.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
