Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-octaprenyl-6-methoxyphenol hydroxylase | CLV88_102424 | Not Available | Positive | 1236952 - 1238166 | 43410.8 |
| hypothetical protein | CLV88_102425 | Not Available | Negative | 1238273 - 1238455 | 6788.37 |
| hypothetical protein | CLV88_102426 | Not Available | Negative | 1238452 - 1239096 | 23943.9 |
| thioredoxin | CLV88_102427 | Not Available | Negative | 1239123 - 1240052 | 32094.6 |
| exodeoxyribonuclease-3 | CLV88_102428 | Not Available | Negative | 1240192 - 1240980 | 29551.8 |
| hypothetical protein | CLV88_102429 | Not Available | Negative | 1241046 - 1241351 | 10873.5 |
| winged helix family two component transcriptional regulator | CLV88_102430 | Not Available | Negative | 1241433 - 1242119 | 25874.2 |
| gtp cyclohydrolase ii | CLV88_102431 | Not Available | Positive | 1242306 - 1243397 | 39434.6 |
| l,d-transpeptidase-like protein | CLV88_102432 | Not Available | Positive | 1243394 - 1243888 | 18359.0 |
| hypothetical protein | CLV88_102433 | Not Available | Negative | 1243955 - 1244605 | 23426.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
