Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-sigma-factor antagonist | CLV88_102414 | Not Available | Positive | 1225872 - 1226201 | 11954.4 |
| serine/threonine-protein kinase rsbw | CLV88_102415 | Not Available | Positive | 1226234 - 1226668 | 15837.0 |
| gamma-glutamyltransferase 2 | CLV88_102416 | Not Available | Positive | 1226763 - 1228340 | 55552.3 |
| heat shock protein hspq | CLV88_102417 | Not Available | Negative | 1228354 - 1228680 | 12677.6 |
| hypothetical protein | CLV88_102418 | Not Available | Positive | 1228764 - 1229645 | 30604.7 |
| hypothetical protein | CLV88_102419 | Not Available | Positive | 1229741 - 1230328 | 22325.6 |
| outer membrane lipoprotein-sorting protein | CLV88_102420 | Not Available | Negative | 1230372 - 1230971 | 21963.4 |
| dna translocase ftsk | CLV88_102421 | Not Available | Negative | 1231062 - 1234043 | 107083.0 |
| aspartate/methionine/tyrosine aminotransferase | CLV88_102422 | Not Available | Negative | 1234062 - 1235243 | 43407.7 |
| aspartyl-trna(asn)/glutamyl-trna(gln) amidotransferase subunit a | CLV88_102423 | Not Available | Negative | 1235537 - 1236865 | 46550.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
