Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-methylaminobutanoate oxidase (formaldehyde-forming) | CLV88_102404 | Not Available | Negative | 1215282 - 1217732 | 89402.3 |
| homocysteine s-methyltransferase | CLV88_102405 | Not Available | Negative | 1217789 - 1218685 | 31765.2 |
| alcohol dehydrogenase | CLV88_102406 | Not Available | Negative | 1218682 - 1219749 | 36803.0 |
| dimethylglycine dehydrogenase | CLV88_102407 | Not Available | Negative | 1219814 - 1222276 | 90850.4 |
| hypothetical protein | CLV88_102408 | Not Available | Negative | 1222288 - 1222554 | 8814.85 |
| glutathione-dependent formaldehyde-activating enzyme | CLV88_102409 | Not Available | Negative | 1222554 - 1222796 | 8939.44 |
| hypothetical protein | CLV88_102410 | Not Available | Negative | 1222942 - 1223313 | 13580.9 |
| xre family transcriptional regulator | CLV88_102411 | Not Available | Negative | 1223324 - 1223824 | 18222.6 |
| gaf domain-containing protein | CLV88_102412 | Not Available | Negative | 1224012 - 1224467 | 16051.8 |
| acetyl-coa c-acetyltransferase | CLV88_102413 | Not Available | Negative | 1224525 - 1225697 | 40538.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
