Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiosulfate/3-mercaptopyruvate sulfurtransferase | CLV88_102394 | Not Available | Negative | 1205156 - 1206013 | 31319.2 |
| hypothetical protein | CLV88_102395 | Not Available | Positive | 1206182 - 1206946 | 28328.4 |
| ssra-binding protein | CLV88_102396 | Not Available | Negative | 1206929 - 1207450 | 20043.2 |
| putative n6-adenine-specific dna methylase | CLV88_102397 | Not Available | Positive | 1207577 - 1208683 | 39702.9 |
| dna polymerase iii alpha subunit | CLV88_102398 | Not Available | Negative | 1208761 - 1211700 | 109159.0 |
| ribosomal large subunit pseudouridine synthase a | CLV88_102399 | Not Available | Negative | 1211846 - 1212499 | 24106.3 |
| hypothetical protein | CLV88_102400 | Not Available | Positive | 1212601 - 1213011 | 15196.5 |
| lysophospholipase l1-like esterase | CLV88_102401 | Not Available | Positive | 1213016 - 1213720 | 25754.5 |
| chloramphenicol-sensitive protein rard | CLV88_102402 | Not Available | Negative | 1213717 - 1214622 | 32754.4 |
| hypothetical protein | CLV88_102403 | Not Available | Positive | 1214635 - 1214973 | 11840.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
