Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pterin-4-alpha-carbinolamine dehydratase | CLV88_102374 | Not Available | Negative | 1186831 - 1187121 | 10729.7 |
| hypothetical protein | CLV88_102375 | Not Available | Negative | 1187118 - 1188305 | 44030.9 |
| glycerophosphoryl diester phosphodiesterase | CLV88_102376 | Not Available | Negative | 1188417 - 1189175 | 27327.2 |
| enamine deaminase rida (yjgf/yer057c/uk114 family) | CLV88_102377 | Not Available | Negative | 1189182 - 1189643 | 15585.8 |
| hlyd family secretion protein | CLV88_102378 | Not Available | Negative | 1189744 - 1191063 | 48742.3 |
| atp-binding cassette subfamily c protein | CLV88_102379 | Not Available | Negative | 1191060 - 1192682 | 58126.9 |
| phospholipid-binding lipoprotein mlaa | CLV88_102380 | Not Available | Positive | 1192985 - 1193764 | 28982.7 |
| phospholipid transport system substrate-binding protein | CLV88_102381 | Not Available | Positive | 1193751 - 1194362 | 22103.8 |
| hypothetical protein | CLV88_102382 | Not Available | Positive | 1194455 - 1194868 | 14448.4 |
| acetyltransferase (gnat) family protein | CLV88_102383 | Not Available | Negative | 1194871 - 1195302 | 15578.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
