Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative membrane protein | CLV88_10187 | Not Available | Positive | 84233 - 85120 | 31781.9 |
| hypothetical protein | CLV88_10188 | Not Available | Negative | 85117 - 85812 | 25349.5 |
| hypothetical protein | CLV88_10189 | Not Available | Positive | 85928 - 86020 | 3426.21 |
| aconitase | CLV88_10190 | Not Available | Positive | 86045 - 88732 | 96868.1 |
| cytochrome c biogenesis protein ccmg/thiol:disulfide interchange protein dsbe | CLV88_10191 | Not Available | Negative | 88806 - 89339 | 19344.4 |
| heme exporter protein d | CLV88_10192 | Not Available | Negative | 89332 - 89484 | 5615.89 |
| heme exporter protein c | CLV88_10193 | Not Available | Negative | 89481 - 90212 | 27176.6 |
| heme exporter protein b | CLV88_10194 | Not Available | Negative | 90307 - 90963 | 22550.8 |
| heme exporter protein a | CLV88_10195 | Not Available | Negative | 90960 - 91583 | 21843.4 |
| uncharacterized protein | CLV88_10196 | Not Available | Negative | 91878 - 92231 | 12343.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
