Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine/d-amino acid oxidase-like deaminating enzyme | CLV88_102354 | Not Available | Negative | 1167332 - 1168429 | 38853.5 |
| dihydrofolate synthase/folylpolyglutamate synthase | CLV88_102355 | Not Available | Negative | 1168736 - 1170010 | 44666.8 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | CLV88_102356 | Not Available | Negative | 1170007 - 1170987 | 35835.7 |
| hypothetical protein | CLV88_102357 | Not Available | Negative | 1171052 - 1171933 | 31882.0 |
| hypothetical protein | CLV88_102358 | Not Available | Positive | 1172121 - 1172891 | 29914.0 |
| hypothetical protein | CLV88_102359 | Not Available | Positive | 1172914 - 1173288 | 13725.3 |
| 2,4-dienoyl-coa reductase | CLV88_102360 | Not Available | Positive | 1173663 - 1175690 | 72654.2 |
| lysr family transcriptional regulator | CLV88_102361 | Not Available | Negative | 1175763 - 1176701 | 33487.4 |
| hypothetical protein | CLV88_102362 | Not Available | Positive | 1176822 - 1177793 | 33346.9 |
| lysr family transcriptional regulator | CLV88_102363 | Not Available | Positive | 1178087 - 1178992 | 33149.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
