Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i phosphodiesterase/nucleotide pyrophosphatase | CLV88_102344 | Not Available | Negative | 1155357 - 1156193 | 30999.8 |
| peptide/nickel transport system atp-binding protein | CLV88_102345 | Not Available | Negative | 1156277 - 1157914 | 59203.5 |
| peptide/nickel transport system permease protein | CLV88_102346 | Not Available | Negative | 1157911 - 1158726 | 29061.2 |
| peptide/nickel transport system permease protein | CLV88_102347 | Not Available | Negative | 1158738 - 1159694 | 34500.6 |
| peptide/nickel transport system substrate-binding protein | CLV88_102348 | Not Available | Negative | 1159696 - 1161285 | 57175.5 |
| hypothetical protein | CLV88_102349 | Not Available | Negative | 1161588 - 1163576 | 73601.0 |
| ribosome biogenesis gtpase | CLV88_102350 | Not Available | Positive | 1163903 - 1164976 | 39040.2 |
| putative membrane protein yeih | CLV88_102351 | Not Available | Negative | 1165040 - 1165654 | 21291.8 |
| thioredoxin reductase | CLV88_102352 | Not Available | Negative | 1165647 - 1167053 | 50140.3 |
| 2fe-2s iron-sulfur cluster protein | CLV88_102353 | Not Available | Negative | 1167040 - 1167354 | 11310.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
