Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_102334 | Not Available | Positive | 1141881 - 1142639 | 28383.3 |
| 3-oxoacyl-[acyl-carrier protein] reductase | CLV88_102335 | Not Available | Positive | 1142719 - 1143462 | 26319.5 |
| response regulator receiver and antar domain protein | CLV88_102336 | Not Available | Positive | 1143478 - 1144233 | 27648.8 |
| nitt/taut family transport system atp-binding protein | CLV88_102337 | Not Available | Positive | 1144230 - 1145405 | 41779.4 |
| nitrate/nitrite transport system substrate-binding protein | CLV88_102338 | Not Available | Positive | 1145669 - 1147033 | 50207.4 |
| nitrate/nitrite transport system permease protein | CLV88_102339 | Not Available | Positive | 1147137 - 1148219 | 39141.3 |
| nitrate/nitrite transport system atp-binding protein | CLV88_102340 | Not Available | Positive | 1148226 - 1149908 | 61893.8 |
| assimilatory nitrite reductase (nad(p)h) large subunit precursor | CLV88_102341 | Not Available | Positive | 1149914 - 1152358 | 87945.0 |
| nitrite reductase (nadh) small subunit | CLV88_102342 | Not Available | Positive | 1152355 - 1152687 | 11959.3 |
| assimilatory nitrate reductase (nadh) alpha subunit apoprotein | CLV88_102343 | Not Available | Positive | 1152687 - 1155329 | 93652.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
