Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| long-chain acyl-coa synthetase | CLV88_102324 | Not Available | Positive | 1129866 - 1131380 | 53946.3 |
| acetyl-coa c-acetyltransferase | CLV88_102325 | Not Available | Positive | 1131355 - 1132530 | 40326.5 |
| dihydroxyacid dehydratase | CLV88_102326 | Not Available | Negative | 1132647 - 1134497 | 66754.8 |
| lactoylglutathione lyase family protein | CLV88_102327 | Not Available | Positive | 1134733 - 1135230 | 18744.1 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | CLV88_102328 | Not Available | Positive | 1135653 - 1136930 | 45873.0 |
| amino acid/amide abc transporter membrane protein 1 (haat family) | CLV88_102329 | Not Available | Positive | 1137024 - 1139003 | 69991.0 |
| hypothetical protein | CLV88_102330 | Not Available | Positive | 1139008 - 1139148 | 4839.96 |
| amino acid/amide abc transporter membrane protein 2 (haat family) | CLV88_102331 | Not Available | Positive | 1139145 - 1140377 | 44020.9 |
| urea transport system atp-binding protein | CLV88_102332 | Not Available | Positive | 1140374 - 1141114 | 27101.7 |
| amino acid/amide abc transporter atp-binding protein 2 (haat family) | CLV88_102333 | Not Available | Positive | 1141118 - 1141813 | 25292.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
