Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2'-5' rna ligase | CLV88_102304 | Not Available | Negative | 1116415 - 1116984 | 20215.6 |
| glyoxylate reductase | CLV88_102305 | Not Available | Negative | 1116988 - 1117974 | 36044.6 |
| sh3-like domain-containing protein | CLV88_102306 | Not Available | Positive | 1118094 - 1118597 | 18470.5 |
| phosphonate abc transporter substrate-binding protein | CLV88_102307 | Not Available | Positive | 1118655 - 1119425 | 28339.3 |
| ribulose-5-phosphate 3-epimerase | CLV88_102308 | Not Available | Negative | 1119488 - 1120177 | 24303.3 |
| urease accessory protein | CLV88_102309 | Not Available | Positive | 1120464 - 1121354 | 32150.8 |
| urease subunit gamma | CLV88_102310 | Not Available | Positive | 1121356 - 1121658 | 10908.4 |
| hypothetical protein | CLV88_102311 | Not Available | Positive | 1121675 - 1121839 | 5891.43 |
| urease subunit beta | CLV88_102312 | Not Available | Positive | 1121836 - 1122144 | 10914.0 |
| hypothetical protein | CLV88_102313 | Not Available | Positive | 1122165 - 1122872 | 23993.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
