Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine/d-amino acid oxidase-like deaminating enzyme | CLV88_102294 | Not Available | Positive | 1104935 - 1106011 | 38293.2 |
| uncharacterized protein duf938 | CLV88_102295 | Not Available | Positive | 1106011 - 1106667 | 23131.4 |
| ahpd family alkylhydroperoxidase | CLV88_102296 | Not Available | Positive | 1106754 - 1107092 | 12007.7 |
| ef hand domain-containing protein | CLV88_102297 | Not Available | Positive | 1107154 - 1107558 | 14880.9 |
| dimethylglycine dehydrogenase | CLV88_102298 | Not Available | Negative | 1107632 - 1110139 | 93444.5 |
| pantothenate synthetase | CLV88_102299 | Not Available | Positive | 1110320 - 1111165 | 30534.0 |
| ketopantoate hydroxymethyltransferase | CLV88_102300 | Not Available | Positive | 1111162 - 1111971 | 28963.1 |
| dihydroflavonol-4-reductase | CLV88_102301 | Not Available | Negative | 1111984 - 1113051 | 38912.8 |
| d-lactate dehydrogenase (cytochrome) | CLV88_102302 | Not Available | Negative | 1113150 - 1114550 | 49140.7 |
| gamma-glutamyltranspeptidase/glutathione hydrolase | CLV88_102303 | Not Available | Negative | 1114610 - 1116379 | 61691.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
