Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dimethylglycine dehydrogenase | CLV88_102284 | Not Available | Negative | 1092958 - 1095360 | 87907.7 |
| hypothetical protein | CLV88_102285 | Not Available | Positive | 1095543 - 1097258 | 61367.4 |
| dna-binding marr family transcriptional regulator | CLV88_102286 | Not Available | Negative | 1097261 - 1097716 | 17082.6 |
| catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme | CLV88_102287 | Not Available | Positive | 1098041 - 1098622 | 21904.6 |
| putative tricarboxylic transport membrane protein | CLV88_102288 | Not Available | Negative | 1098666 - 1100180 | 52356.9 |
| putative tricarboxylic transport membrane protein | CLV88_102289 | Not Available | Negative | 1100182 - 1100664 | 17877.7 |
| putative tricarboxylic transport membrane protein | CLV88_102290 | Not Available | Negative | 1100733 - 1101719 | 34073.6 |
| two-component system response regulator tctd | CLV88_102291 | Not Available | Positive | 1101828 - 1102496 | 25288.0 |
| two-component system sensor histidine kinase tcte | CLV88_102292 | Not Available | Positive | 1102486 - 1103865 | 49194.0 |
| iron(iii) transport system substrate-binding protein | CLV88_102293 | Not Available | Positive | 1103844 - 1104851 | 37614.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
