Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| major royal jelly protein | CLV88_102274 | Not Available | Positive | 1084424 - 1085614 | 43912.2 |
| 2-keto-3-deoxygluconate kinase | CLV88_102275 | Not Available | Positive | 1085676 - 1086596 | 32061.5 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_102276 | Not Available | Positive | 1086596 - 1087300 | 24389.1 |
| quercetin dioxygenase-like cupin family protein | CLV88_102277 | Not Available | Positive | 1087317 - 1087844 | 20522.3 |
| methylglyoxal synthase | CLV88_102278 | Not Available | Positive | 1087822 - 1088220 | 14137.0 |
| amino acid abc transporter substrate-binding protein (paat family) | CLV88_102279 | Not Available | Positive | 1088352 - 1089179 | 29096.2 |
| amino acid abc transporter membrane protein (paat family) | CLV88_102280 | Not Available | Positive | 1089179 - 1090009 | 30356.8 |
| amino acid abc transporter atp-binding protein (paat family) | CLV88_102281 | Not Available | Positive | 1090006 - 1090740 | 27294.5 |
| tetr family transcriptional regulator | CLV88_102282 | Not Available | Negative | 1090750 - 1091412 | 25171.9 |
| trimethylamine--corrinoid protein co-methyltransferase | CLV88_102283 | Not Available | Negative | 1091417 - 1092961 | 56253.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
