Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside abc transporter membrane protein | CLV88_102264 | Not Available | Positive | 1075170 - 1076249 | 38253.8 |
| nucleoside abc transporter membrane protein | CLV88_102265 | Not Available | Positive | 1076249 - 1077169 | 31567.8 |
| nucleoside-binding protein | CLV88_102266 | Not Available | Positive | 1077210 - 1078280 | 38233.8 |
| gntr family transcriptional regulator | CLV88_102267 | Not Available | Negative | 1078450 - 1079109 | 24819.4 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_102268 | Not Available | Positive | 1079234 - 1079740 | 18700.4 |
| tripartite atp-independent transporter dctm subunit | CLV88_102269 | Not Available | Positive | 1079744 - 1081030 | 44637.4 |
| tripartite atp-independent transporter dctp family solute receptor | CLV88_102270 | Not Available | Positive | 1081050 - 1082060 | 35691.6 |
| d-3-phosphoglycerate dehydrogenase | CLV88_102271 | Not Available | Positive | 1082081 - 1083049 | 34888.6 |
| 2-dehydro-3-deoxyphosphogluconate aldolase/(4s)-4-hydroxy-2-oxoglutarate aldolase | CLV88_102272 | Not Available | Positive | 1083043 - 1083675 | 21563.2 |
| regulator of rnase e activity rraa | CLV88_102273 | Not Available | Positive | 1083699 - 1084349 | 22926.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
