Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf3445 | CLV88_10177 | Not Available | Negative | 75746 - 76519 | 28782.6 |
| dimethylsulfoniopropionate lyase dddp | CLV88_10178 | Not Available | Positive | 76638 - 77981 | 50432.8 |
| putative redox protein | CLV88_10179 | Not Available | Positive | 78089 - 79309 | 43323.4 |
| hypothetical protein | CLV88_10180 | Not Available | Negative | 79316 - 79624 | 11436.8 |
| hypothetical protein | CLV88_10181 | Not Available | Negative | 79636 - 80199 | 20166.8 |
| hypothetical protein | CLV88_10182 | Not Available | Negative | 80267 - 80599 | 12321.2 |
| adenylosuccinate lyase | CLV88_10183 | Not Available | Positive | 80678 - 81982 | 48609.7 |
| chitin binding peritrophin-a-like protein | CLV88_10184 | Not Available | Positive | 82215 - 82376 | 5615.77 |
| hypothetical protein | CLV88_10185 | Not Available | Positive | 82448 - 83005 | 20209.8 |
| flagellar motor switch protein flig | CLV88_10186 | Not Available | Positive | 83069 - 84151 | 38787.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
