Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ceramidase | CLV88_102254 | Not Available | Negative | 1063297 - 1063953 | 24461.5 |
| l-ascorbate metabolism protein ulag (beta-lactamase superfamily) | CLV88_102255 | Not Available | Positive | 1064023 - 1064715 | 24946.9 |
| class 3 adenylate cyclase | CLV88_102256 | Not Available | Positive | 1064744 - 1065712 | 34962.0 |
| ectoine hydrolase | CLV88_102257 | Not Available | Positive | 1065712 - 1066890 | 42958.5 |
| trna(arg) a34 adenosine deaminase tada | CLV88_102258 | Not Available | Negative | 1066887 - 1067348 | 16512.7 |
| 23s rrna pseudouridine2605 synthase | CLV88_102259 | Not Available | Positive | 1067400 - 1068194 | 29817.2 |
| dna polymerase iii alpha subunit | CLV88_102260 | Not Available | Negative | 1068215 - 1071733 | 128867.0 |
| putative transposase | CLV88_102261 | Not Available | Positive | 1071897 - 1072163 | 10148.2 |
| putative transposase | CLV88_102262 | Not Available | Positive | 1072383 - 1072937 | 21341.7 |
| nucleoside abc transporter atp-binding protein | CLV88_102263 | Not Available | Positive | 1073626 - 1075173 | 54450.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
