Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| moxr-like atpase | CLV88_102244 | Not Available | Positive | 1055054 - 1055908 | 31607.2 |
| uncharacterized protein with von willebrand factor type a (vwa) domain | CLV88_102245 | Not Available | Positive | 1055908 - 1057089 | 42933.3 |
| xanthine dehydrogenase accessory factor | CLV88_102246 | Not Available | Positive | 1057098 - 1057913 | 28245.5 |
| hypothetical protein | CLV88_102247 | Not Available | Positive | 1057897 - 1058007 | 4232.17 |
| hypothetical protein | CLV88_102248 | Not Available | Positive | 1058027 - 1058479 | 15589.6 |
| rpir family transcriptional regulator | CLV88_102249 | Not Available | Negative | 1058520 - 1059389 | 32820.6 |
| putative n-formylglutamate amidohydrolase | CLV88_102250 | Not Available | Positive | 1059507 - 1060289 | 27823.9 |
| trap-type mannitol/chloroaromatic compound transport system permease small subunit | CLV88_102251 | Not Available | Positive | 1060286 - 1060870 | 22253.6 |
| tripartite atp-independent transporter dctm subunit | CLV88_102252 | Not Available | Positive | 1060867 - 1062186 | 47993.4 |
| secreted protein | CLV88_102253 | Not Available | Positive | 1062240 - 1063274 | 38397.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
