Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotide-binding universal stress uspa family protein | CLV88_102234 | Not Available | Positive | 1043056 - 1043460 | 14620.9 |
| putative dehydrogenase | CLV88_102235 | Not Available | Negative | 1043658 - 1044806 | 41531.2 |
| sugar phosphate isomerase/epimerase | CLV88_102236 | Not Available | Negative | 1044808 - 1045866 | 39381.1 |
| monosaccharide abc transporter substrate-binding protein (cut2 family) | CLV88_102237 | Not Available | Negative | 1045937 - 1046896 | 34151.8 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_102238 | Not Available | Negative | 1047003 - 1048022 | 35446.1 |
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_102239 | Not Available | Negative | 1048019 - 1049542 | 55544.7 |
| laci family transcriptional regulator | CLV88_102240 | Not Available | Positive | 1049750 - 1050781 | 36747.1 |
| carbon monoxide dehydrogenase medium subunit | CLV88_102241 | Not Available | Positive | 1051185 - 1052018 | 29479.2 |
| carbon monoxide dehydrogenase small subunit | CLV88_102242 | Not Available | Positive | 1052031 - 1052525 | 17813.5 |
| carbon monoxide dehydrogenase large subunit apoprotein | CLV88_102243 | Not Available | Positive | 1052522 - 1054942 | 87841.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
