Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_102224 | Not Available | Negative | 1031729 - 1032592 | 32443.7 |
| hnh endonuclease | CLV88_102225 | Not Available | Positive | 1033125 - 1033391 | 10263.2 |
| hypothetical protein | CLV88_102226 | Not Available | Positive | 1033410 - 1033787 | 13476.1 |
| hypothetical protein | CLV88_102227 | Not Available | Positive | 1033791 - 1033898 | 4084.7 |
| iclr family transcriptional regulator | CLV88_102228 | Not Available | Negative | 1034299 - 1035168 | 32294.0 |
| choline dehydrogenase | CLV88_102229 | Not Available | Positive | 1035189 - 1036790 | 57961.6 |
| trap-type mannitol/chloroaromatic compound transport system substrate-binding protein | CLV88_102230 | Not Available | Positive | 1036907 - 1038001 | 39070.6 |
| tripartite atp-independent transporter dctm subunit | CLV88_102231 | Not Available | Positive | 1038126 - 1040606 | 89937.0 |
| hypothetical protein | CLV88_102232 | Not Available | Positive | 1040610 - 1041662 | 38410.6 |
| sulfopropanediol 3-dehydrogenase | CLV88_102233 | Not Available | Positive | 1041662 - 1042990 | 47584.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
