Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_102214 | Not Available | Negative | 1021884 - 1022639 | 27258.8 |
| marr family transcriptional regulator | CLV88_102215 | Not Available | Negative | 1022654 - 1023871 | 43666.3 |
| phosphoribulokinase/uridine kinase family protein | CLV88_102216 | Not Available | Negative | 1023950 - 1024594 | 23971.5 |
| sugar/nucleoside kinase (ribokinase family) | CLV88_102217 | Not Available | Negative | 1024587 - 1025405 | 29100.2 |
| fructose-bisphosphate aldolase | CLV88_102218 | Not Available | Negative | 1025432 - 1026505 | 38338.8 |
| beta-fructofuranosidase | CLV88_102219 | Not Available | Negative | 1026516 - 1028003 | 55840.2 |
| abc-type sugar transport system substrate-binding protein | CLV88_102220 | Not Available | Negative | 1028082 - 1029158 | 39042.8 |
| hypothetical protein | CLV88_102221 | Not Available | Positive | 1029475 - 1029882 | 14633.5 |
| serine/threonine-protein kinase hipa | CLV88_102222 | Not Available | Negative | 1030035 - 1031336 | 48064.6 |
| xre family transcriptional regulator | CLV88_102223 | Not Available | Negative | 1031338 - 1031589 | 9111.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
