Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxy-l-arabinonate dehydratase | CLV88_102204 | Not Available | Negative | 1011613 - 1012527 | 33147.6 |
| nadp-dependent aldehyde dehydrogenase | CLV88_102205 | Not Available | Negative | 1012546 - 1014051 | 52922.2 |
| fumarylacetoacetate (faa) hydrolase family protein | CLV88_102206 | Not Available | Negative | 1014064 - 1015212 | 40944.7 |
| regulator of rnase e activity rraa | CLV88_102207 | Not Available | Negative | 1015251 - 1015916 | 23977.6 |
| 3-oxoacyl-[acyl-carrier protein] reductase | CLV88_102208 | Not Available | Negative | 1015950 - 1016678 | 25470.3 |
| ureidoglycolate lyase | CLV88_102209 | Not Available | Negative | 1016848 - 1017690 | 29887.5 |
| 2-keto-3-deoxy-l-fuconate dehydrogenase | CLV88_102210 | Not Available | Negative | 1017703 - 1018449 | 26099.0 |
| aspartate/methionine/tyrosine aminotransferase | CLV88_102211 | Not Available | Negative | 1018475 - 1019647 | 42444.9 |
| dna-binding lrp family transcriptional regulator | CLV88_102212 | Not Available | Positive | 1019758 - 1020183 | 15935.5 |
| ribose transport system permease protein | CLV88_102213 | Not Available | Negative | 1020871 - 1021872 | 34792.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
