Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system protein vird4 | CLV88_102184 | Not Available | Negative | 990338 - 992230 | 69672.3 |
| type iv secretion system t-dna border endonuclease vird2 | CLV88_102185 | Not Available | Negative | 992223 - 994031 | 67135.1 |
| hypothetical protein | CLV88_102186 | Not Available | Negative | 994018 - 994608 | 21909.1 |
| hypothetical protein | CLV88_102187 | Not Available | Negative | 994783 - 995064 | 10376.9 |
| hypothetical protein | CLV88_102188 | Not Available | Negative | 995061 - 995276 | 7796.22 |
| hypothetical protein | CLV88_102189 | Not Available | Negative | 995273 - 995476 | 7469.61 |
| antirestriction protein ardc | CLV88_102190 | Not Available | Negative | 995473 - 996351 | 32526.2 |
| hypothetical protein | CLV88_102191 | Not Available | Positive | 996840 - 997100 | 9418.37 |
| sarcosine oxidase subunit gamma | CLV88_102192 | Not Available | Negative | 997218 - 997781 | 20137.9 |
| sarcosine oxidase subunit alpha | CLV88_102193 | Not Available | Negative | 997774 - 1000731 | 107042.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
