Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion system protein virb9 | CLV88_102174 | Not Available | Positive | 981094 - 981789 | 25721.1 |
| type iv secretion system protein virb10 | CLV88_102175 | Not Available | Positive | 981782 - 983095 | 46732.9 |
| type iv secretion system protein virb11 | CLV88_102176 | Not Available | Positive | 983098 - 984093 | 36445.9 |
| uncharacterized protein duf4177 | CLV88_102177 | Not Available | Positive | 984086 - 984262 | 6474.78 |
| type iv secretion system protein virb6 | CLV88_102178 | Not Available | Positive | 984283 - 985281 | 34731.1 |
| hypothetical protein | CLV88_102179 | Not Available | Negative | 985350 - 985811 | 17427.7 |
| hypothetical protein | CLV88_102180 | Not Available | Positive | 986053 - 986589 | 19972.1 |
| hypothetical protein | CLV88_102181 | Not Available | Positive | 986807 - 987904 | 41312.3 |
| hypothetical protein | CLV88_102182 | Not Available | Positive | 987894 - 988388 | 18283.9 |
| hypothetical protein | CLV88_102183 | Not Available | Positive | 988385 - 990217 | 67360.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
