Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_102164 | Not Available | Negative | 973584 - 974018 | 15587.2 |
| hypothetical protein | CLV88_102165 | Not Available | Positive | 974466 - 974792 | 11639.9 |
| transglycosylase-like protein with slt domain | CLV88_102166 | Not Available | Positive | 974857 - 975435 | 20694.7 |
| type iv secretion system protein virb2 | CLV88_102167 | Not Available | Positive | 975435 - 975725 | 10051.7 |
| type iv secretion system protein virb3 | CLV88_102168 | Not Available | Positive | 975733 - 976011 | 10414.0 |
| type iv secretion system protein virb4 | CLV88_102169 | Not Available | Positive | 976001 - 978367 | 87050.1 |
| hypothetical protein | CLV88_102170 | Not Available | Positive | 978360 - 978518 | 5698.92 |
| transglycosylase-like protein with slt domain | CLV88_102171 | Not Available | Positive | 978565 - 979659 | 39187.6 |
| type iv secretion system protein virb5 | CLV88_102172 | Not Available | Positive | 979656 - 980435 | 27855.8 |
| type iv secretion system protein virb8 | CLV88_102173 | Not Available | Positive | 980440 - 981090 | 24122.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
