Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10167 | Not Available | Positive | 65664 - 66350 | 25371.0 |
| hypothetical protein | CLV88_10168 | Not Available | Positive | 66361 - 67023 | 25322.4 |
| hypothetical protein | CLV88_10169 | Not Available | Negative | 67399 - 67488 | 3350.87 |
| phospholipase d-like protein | CLV88_10170 | Not Available | Negative | 67577 - 68923 | 50574.9 |
| Trna-leu | Not Available | Not Available | Positive | 70006 - 70090 | Not Available |
| hydroxyethylthiazole kinase-like uncharacterized protein yjef/hydroxyethylthiazole kinase-like uncharacterized protein yjef | CLV88_10172 | Not Available | Negative | 70177 - 71880 | 59899.5 |
| nitrogen regulatory protein p-ii family | CLV88_10173 | Not Available | Positive | 72056 - 72394 | 12269.8 |
| l-glutamine synthetase | CLV88_10174 | Not Available | Positive | 72438 - 73844 | 52152.4 |
| nadph-dependent fmn reductase | CLV88_10175 | Not Available | Positive | 73967 - 74452 | 17236.8 |
| methyltransferase family protein | CLV88_10176 | Not Available | Negative | 74457 - 75659 | 44088.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
