Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Genome Summary
Shimia abyssi str. DSM 100673
Accession NumberPYGJ00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Large packaging protein | CLV88_103217 | Not Available | + | 1528868 - 1530250 | 50145.4 |
| Portal protein | CLV88_103218 | Not Available | + | 1530563 - 1531573 | 36391.1 |
| hypothetical protein | CLV88_103219 | Not Available | + | 1531566 - 1531793 | 8648.5 |
| Putative prohead protease | CLV88_103220 | Not Available | + | 1531816 - 1532373 | 20064.7 |
| Phage major capsid protein | CLV88_103221 | Not Available | + | 1532405 - 1533586 | 41986.2 |
| Dna packaging/head-tail-connector | CLV88_103222 | Not Available | + | 1533714 - 1534328 | 21555.8 |
| head-tail adaptor | CLV88_103223 | Not Available | + | 1534328 - 1534663 | 12051.3 |
| Gp33 | CLV88_103224 | Not Available | + | 1534660 - 1535076 | 14701.3 |
| Gene transfer aget (gta) orfg9-like phage major tail protein | CLV88_103225 | Not Available | + | 1535093 - 1535506 | 14432.7 |
| tail tube gta-gp10-like protein | CLV88_103226 | Not Available | + | 1535508 - 1535834 | 11185.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.