Pseudonocardia sp. HH130629-09

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia sp. HH130629-09 is a rod-shaped bacterium characterized by its unique genomic structure, featuring two replicons. This trait indicates a complex genomic organization, which is often associated with the adaptability and versatility of bacteria in various environments. The strain has been cataloged under the accession numbers NZ_CP011868.1 and NZ_CP011869.1, which provide a basis for further research and identification. The rod shape of Pseudonocardia sp. HH130629-09 is a significant morphological feature that can influence its ecological roles, particularly in soil and other terrestrial ecosystems. Rod-shaped bacteria are often involved in nutrient cycling and can interact with other microorganisms, contributing to the overall dynamics of microbial communities. The presence of two replicons may also suggest a capacity for efficient regulation of cellular processes, potentially enabling the bacterium to thrive in diverse and changing environments. This genomic characteristic could be advantageous for survival in competitive ecological niches, where metabolic flexibility and genetic adaptability are essential. In summary, Pseudonocardia sp. HH130629-09, with its rod shape and dual replicons, exemplifies a bacterial strategy that could enhance its ecological fitness and role in various habitats, particularly in nutrient cycling and microbial interactions in soil ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia sp. HH130629-09
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia sp. HH130629-09 chromosome, complete genome.

Gene Summary

Adenine Count

797202 bp

Thymine Count

801523 bp

Guanine Count

2232381 bp

Cytosine Count

2227695 bp

Genome Length

6058802 bp

Protein-coding Genes

5706 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3000 domain-containing proteinXF36_RS15320Not AvailablePositive3336196 - 333681621680.2
response regulator transcription factorXF36_RS15325Not AvailablePositive3337142 - 333779522808.4
ribonuclease dXF36_RS15330Q0BVP4Positive3337882 - 333906342510.8
cell wall metabolism sensor histidine kinase walkXF36_RS15335P0A4I7Negative3339088 - 334025439560.0
response regulator transcription factorXF36_RS15340P0A4I1Negative3340259 - 334093623926.7
1-deoxy-d-xylulose-5-phosphate synthaseXF36_RS15345A4FAQ5Negative3340936 - 334287668552.5
ggdef domain-containing proteinXF36_RS15350Q9HT84Positive3343640 - 334493246150.1
ggdef domain-containing proteinXF36_RS15355Not AvailableNegative3344995 - 334631446478.9
histidine phosphatase family proteinXF36_RS15360Not AvailableNegative3346888 - 334748421124.3
hit family proteinXF36_RS15365P49774Negative3347489 - 334791415000.9

Displaying genes 3141 – 3150 of 6015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

445 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 445 metabolites

Health Effects

No health effects information available for this bacterium.