Pseudonocardia sp. HH130629-09

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia sp. HH130629-09 is a rod-shaped bacterium characterized by its unique genomic structure, featuring two replicons. This trait indicates a complex genomic organization, which is often associated with the adaptability and versatility of bacteria in various environments. The strain has been cataloged under the accession numbers NZ_CP011868.1 and NZ_CP011869.1, which provide a basis for further research and identification. The rod shape of Pseudonocardia sp. HH130629-09 is a significant morphological feature that can influence its ecological roles, particularly in soil and other terrestrial ecosystems. Rod-shaped bacteria are often involved in nutrient cycling and can interact with other microorganisms, contributing to the overall dynamics of microbial communities. The presence of two replicons may also suggest a capacity for efficient regulation of cellular processes, potentially enabling the bacterium to thrive in diverse and changing environments. This genomic characteristic could be advantageous for survival in competitive ecological niches, where metabolic flexibility and genetic adaptability are essential. In summary, Pseudonocardia sp. HH130629-09, with its rod shape and dual replicons, exemplifies a bacterial strategy that could enhance its ecological fitness and role in various habitats, particularly in nutrient cycling and microbial interactions in soil ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia sp. HH130629-09
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia sp. HH130629-09 plasmid pLS1-1, complete sequence.

Gene Summary

Adenine Count

35580 bp

Thymine Count

36379 bp

Guanine Count

85097 bp

Cytosine Count

85117 bp

Genome Length

242173 bp

Protein-coding Genes

234 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive640728 - 640744Not Available
IntegraseXF36_RS03065Not AvailablePositive647914 - 64914045897.5
CspXF36_RS03070Not AvailableNegative649149 - 6493678177.51
transposase family proteinXF36_RS03075Not AvailablePositive649548 - 65034529283.5
Is21 transposaseXF36_RS03080Not AvailablePositive650469 - 65172846376.5
Transposase/is proteinXF36_RS03085Not AvailablePositive651725 - 65257631076.3
AttrNot AvailableNot AvailablePositive652722 - 652738Not Available
TransposaseXF36_RS03090Not AvailableNegative652775 - 65407047878.3
transposaseXF36_RS29910Not AvailablePositive654064 - 65441512786.3
Is30 transposaseXF36_RS03095Not AvailableNegative654430 - 65558142890.4

Displaying genes 1 – 10 of 6015 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00039043-amino-4-hydroxybenzoateC7H6NO3Chemical structure of 3-amino-4-hydroxybenzoateNot available
Average152.13Da
Monoisotopic152.035316637Da
BASm00064185-methyl-1-naphthoateC12H9O2Chemical structure of 5-methyl-1-naphthoateNot available
Average185.203Da
Monoisotopic185.06080311Da
BASm00064193-hydroxy-5-methyl-1-naphthoateC12H9O3Chemical structure of 3-hydroxy-5-methyl-1-naphthoateNot available
Average201.202Da
Monoisotopic201.05571773Da
BASm00067902-hydroxy-5-methyl-1-naphthoateC12H9O3Chemical structure of 2-hydroxy-5-methyl-1-naphthoateNot available
Average201.202Da
Monoisotopic201.05571773Da
BASm0007001UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateC28H39N5O23P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateNot available
Average875.582Da
Monoisotopic875.1533009Da

Displaying 1–10 of 11 metabolites

Health Effects

No health effects information available for this bacterium.