Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_09570 | Not Available | Positive | 957129 - 957893 | 27544.2 |
| hypothetical protein | shim_09580 | Not Available | Negative | 957942 - 959018 | 38718.4 |
| hypothetical protein | shim_09590 | Not Available | Positive | 959261 - 959554 | 10750.3 |
| trimethylamine methyltransferase (mttb) | shim_09600 | Not Available | Negative | 959573 - 961117 | 55742.6 |
| putative mg(2+) transport atpase | shim_09610 | Q2YIG0 | Negative | 961255 - 961962 | 24986.7 |
| gmp synthase (glutamine-hydrolyzing) | shim_09620 | Q5LRL6 | Positive | 962104 - 963681 | 58086.1 |
| hypothetical protein | shim_09630 | Not Available | Positive | 963850 - 964650 | 29985.2 |
| autoinducer-2 (ai-2) modifying protein lsrg | shim_09640 | Not Available | Positive | 964643 - 964933 | 10889.0 |
| riboflavin transporter | shim_09650 | Q9ZJZ2 | Positive | 964930 - 965802 | 30977.0 |
| putative dmt superfamily transporter inner membrane protein | shim_09660 | Not Available | Positive | 965869 - 966774 | 32040.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
