Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_09470 | Not Available | Positive | 949527 - 949952 | 16072.0 |
| 2-methylcitrate dehydratase | shim_09480 | Not Available | Negative | 950222 - 951514 | 44522.0 |
| ribosome association toxin rata | shim_09490 | Q9ZDZ7 | Negative | 951532 - 951975 | 16853.2 |
| hypoxanthine phosphoribosyltransferase | shim_09500 | P37171 | Positive | 952075 - 952614 | 20094.2 |
| hypothetical protein | shim_09510 | Not Available | Positive | 952611 - 952799 | 7079.16 |
| hth-type transcriptional regulator tdfr | shim_09520 | Not Available | Negative | 952796 - 953662 | 31265.7 |
| cytochrome c-554 precursor | shim_09530 | Not Available | Positive | 953762 - 954229 | 15737.7 |
| fructose dehydrogenase cytochrome subunit precursor | shim_09540 | Q53143 | Positive | 954300 - 955178 | 31544.2 |
| lipoyl synthase | shim_09550 | Q1GGW2 | Negative | 955243 - 956286 | 38625.3 |
| putative peroxiredoxin | shim_09560 | O69777 | Positive | 956406 - 956954 | 20373.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
