Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_09370 | Not Available | Positive | 937862 - 938293 | 15810.1 |
| nitrogen regulation protein nr(i) | shim_09380 | Q04849 | Negative | 938328 - 939758 | 52404.5 |
| sensor histidine kinase yycg | shim_09390 | Q04850 | Negative | 939755 - 942022 | 83529.4 |
| nitrogen assimilation regulatory protein | shim_09400 | P09432 | Negative | 942122 - 943486 | 50244.8 |
| nitrogen regulation protein nr(ii) | shim_09410 | P09431 | Negative | 943486 - 944571 | 39044.9 |
| trna-dihydrouridine synthase c | shim_09420 | Q08111 | Negative | 944568 - 945578 | 35036.1 |
| bifunctional enzyme ispd/ispf | shim_09430 | A1B890 | Positive | 945738 - 946883 | 40476.2 |
| phosphatidylglycerophosphatase a | shim_09440 | Q8A7J9 | Positive | 946880 - 947368 | 17497.9 |
| nicotinamide-nucleotide amidohydrolase pncc | shim_09450 | B3EL42 | Positive | 947368 - 947841 | 16140.5 |
| ammonium transporter nrga | shim_09460 | O26757 | Positive | 948001 - 949182 | 41028.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
