Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | shim_09270 | Not Available | Positive | 927726 - 928286 | 19407.1 |
| alpha/beta hydrolase family protein | shim_09280 | Not Available | Positive | 928294 - 929097 | 28417.1 |
| 2-hydroxy-3-oxopropionate reductase | shim_09290 | O33730 | Negative | 929072 - 929944 | 30481.2 |
| acyl-homoserine lactone acylase quip precursor | shim_09300 | P15558 | Positive | 930027 - 932495 | 90152.6 |
| hypothetical protein | shim_09310 | Not Available | Negative | 932508 - 932750 | 9118.36 |
| gtpase hflx | shim_09320 | A0L4B2 | Negative | 932711 - 933985 | 46568.7 |
| rna-binding protein hfq | shim_09330 | Q165Q6 | Negative | 933985 - 934224 | 8948.85 |
| trk system potassium uptake protein trkh | shim_09340 | Q87TN7 | Negative | 934352 - 935872 | 54594.5 |
| trk system potassium uptake protein trka | shim_09350 | Q04856 | Negative | 935877 - 937253 | 49973.2 |
| hypothetical protein | shim_09360 | Not Available | Positive | 937375 - 937848 | 16569.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
