Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methionine synthase | shim_09170 | Q8TTB0 | Positive | 915483 - 916184 | 25329.8 |
| hypothetical protein | shim_09180 | Not Available | Positive | 916271 - 916909 | 23650.1 |
| fatty acid desaturase | shim_09190 | Not Available | Negative | 916913 - 917956 | 39787.1 |
| dna-binding transcriptional repressor puur | shim_09200 | Not Available | Negative | 918105 - 918737 | 23572.1 |
| benzoate--coa ligase | shim_09210 | Q9AJS8 | Positive | 918809 - 920329 | 54490.8 |
| dsba-like thioredoxin domain protein | shim_09220 | Not Available | Positive | 920326 - 920964 | 23768.0 |
| bicyclomycin resistance protein | shim_09230 | P28246 | Positive | 921152 - 922363 | 43810.3 |
| transcription-repair-coupling factor | shim_09240 | Q1RI82 | Negative | 922453 - 925926 | 127801.0 |
| hypothetical protein | shim_09250 | Not Available | Negative | 925960 - 926484 | 19903.4 |
| delta-aminolevulinic acid dehydratase | shim_09260 | P42504 | Positive | 926603 - 927604 | 36001.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
