Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate transport sensor protein dctb | shim_09070 | Q9HU20 | Negative | 904813 - 906549 | 63355.3 |
| phosphoribosylformylglycinamidine synthase 1 | shim_09080 | Q1GGM0 | Negative | 906613 - 907281 | 23394.8 |
| phosphoribosylformylglycinamidine synthase subunit purs | shim_09090 | P12049 | Negative | 907281 - 907511 | 8211.97 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | shim_09100 | Q167J5 | Negative | 907602 - 908357 | 28068.8 |
| hypothetical protein | shim_09110 | Not Available | Positive | 908511 - 908825 | 12068.5 |
| lysyl-trna synthetase | shim_09120 | Not Available | Positive | 909018 - 910934 | 68618.2 |
| bifunctional homocysteine s-methyltransferase/5,10-methylenetetrahydrofolate reductase | shim_09130 | Q09582 | Positive | 911044 - 912063 | 35974.5 |
| adenylate cyclase 1 | shim_09140 | P43524 | Positive | 912322 - 913500 | 42510.3 |
| succinoglycan biosynthesis protein exoi | shim_09150 | Not Available | Negative | 913686 - 914078 | 14418.5 |
| radical sam superfamily protein | shim_09160 | P9WL78 | Negative | 914181 - 915266 | 41201.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
