Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pentalenene oxygenase | shim_08970 | C9K1X7 | Negative | 893275 - 894636 | 51670.3 |
| hypothetical protein | shim_08980 | Not Available | Negative | 894633 - 895850 | 44853.0 |
| thiol:disulfide interchange protein dsbd precursor | shim_08990 | Not Available | Negative | 895907 - 896659 | 26706.5 |
| sulfurtransferase tusa | shim_09000 | A8FP60 | Positive | 896752 - 896973 | 8012.93 |
| ribonuclease e | shim_09010 | P44443 | Negative | 897039 - 900170 | 113670.0 |
| hypothetical protein | shim_09020 | Not Available | Negative | 900718 - 900942 | 8095.7 |
| hth-type transcriptional regulator hmrr | shim_09030 | Q9X5X4 | Positive | 901431 - 901820 | 14127.9 |
| phosphorylated carbohydrates phosphatase | shim_09040 | P77625 | Negative | 901924 - 902610 | 24352.1 |
| hypothetical protein | shim_09050 | Not Available | Negative | 902666 - 903355 | 24073.3 |
| c4-dicarboxylate transport transcriptional regulatory protein dctd | shim_09060 | P13632 | Negative | 903472 - 904806 | 48899.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
