Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a biosynthesis lauroyl acyltransferase | shim_08870 | Not Available | Positive | 882290 - 883207 | 33803.6 |
| ribosomal rna large subunit methyltransferase e | shim_08880 | Q1GHF1 | Negative | 883502 - 884224 | 25995.1 |
| guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase | shim_08890 | C6DHF6 | Negative | 884288 - 885400 | 40787.2 |
| hypothetical protein | shim_08900 | Not Available | Positive | 885650 - 885946 | 11050.1 |
| hypothetical protein | shim_08910 | G2IQS8 | Positive | 885973 - 886899 | 33174.6 |
| 5-methyltetrahydrofolate:corrinoid/iron-sulfur protein co-methyltransferase | shim_08920 | P0DX08 | Positive | 886909 - 887988 | 38298.0 |
| putative sulfoacetate--coa ligase | shim_08930 | C4ZPW3 | Negative | 888080 - 889678 | 58786.0 |
| putative cardiolipin synthase ywie | shim_08940 | B7V5T6 | Positive | 889775 - 891187 | 52266.8 |
| hypothetical protein | shim_08950 | Not Available | Negative | 891152 - 892015 | 31835.1 |
| hypothetical protein | shim_08960 | Not Available | Positive | 892515 - 893243 | 26238.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
