Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autoinducer 2 sensor kinase/phosphatase luxq | shim_08770 | Not Available | Positive | 869013 - 871523 | 90936.9 |
| dtdp-4-oxo-6-deoxy-d-allose reductase | shim_08780 | Q84KI6 | Positive | 871669 - 872880 | 44609.3 |
| bacterial cellulose synthase subunit | shim_08790 | Not Available | Positive | 872961 - 874493 | 54781.4 |
| poly-beta-1,6-n-acetyl-d-glucosamine synthase | shim_08800 | P96587 | Positive | 874490 - 876331 | 67271.5 |
| n,n'-diacetyllegionaminic acid synthase | shim_08810 | Q58465 | Positive | 876618 - 877646 | 37564.9 |
| sulfotransferase family protein | shim_08820 | Not Available | Positive | 877773 - 878444 | 25947.1 |
| udp-n-acetylglucosamine 2-epimerase | shim_08830 | H2VFI5 | Positive | 878503 - 879624 | 40876.0 |
| inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase | shim_08840 | Not Available | Negative | 879681 - 880616 | 34558.3 |
| 3-oxoacyl-(acyl-carrier-protein) reductase fabg | shim_08850 | Not Available | Negative | 880610 - 881401 | 28536.0 |
| cmp-n,n'-diacetyllegionaminic acid synthase | shim_08860 | Q45982 | Negative | 881404 - 882114 | 25886.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
