Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine/o-acetylserine efflux protein | shim_08670 | Not Available | Negative | 863126 - 863719 | 20970.1 |
| 50s ribosomal protein l27 | shim_08680 | Q1GHD2 | Negative | 863802 - 864071 | 9471.49 |
| 50s ribosomal protein l21 | shim_08690 | Q165Y2 | Negative | 864095 - 864745 | 22586.4 |
| hypothetical protein | shim_08700 | Not Available | Negative | 864984 - 865865 | 32542.5 |
| Trna-ser | Not Available | Not Available | Positive | 865965 - 866054 | Not Available |
| hypothetical protein | shim_08720 | Not Available | Positive | 866188 - 866310 | 4457.31 |
| bacterial extracellular solute-binding protein, family 3 | shim_08730 | Not Available | Positive | 866749 - 867477 | 26435.7 |
| hypothetical protein | shim_08740 | Not Available | Positive | 867594 - 867704 | 4136.85 |
| response regulator protein vrar | shim_08750 | P66798 | Negative | 867730 - 868347 | 21797.2 |
| oxidoreductase molybdopterin binding domain protein | shim_08760 | Not Available | Positive | 868508 - 868981 | 17123.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
