Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s2 | shim_08570 | Q1GHC3 | Negative | 854800 - 855582 | 27967.4 |
| hypothetical protein | shim_08580 | Q9P6M1 | Positive | 855866 - 856474 | 22557.4 |
| 2-acyl-glycerophospho-ethanolamine acyltransferase | shim_08590 | D5AQD5 | Negative | 856471 - 857295 | 30872.8 |
| hypothetical protein | shim_08600 | D5AQD6 | Negative | 857292 - 858071 | 29187.1 |
| hypothetical protein | shim_08610 | Not Available | Negative | 858207 - 858389 | 6459.73 |
| hypothetical protein | shim_08620 | Q2YQA5 | Positive | 858419 - 859024 | 21701.1 |
| gamma-glutamyl phosphate reductase | shim_08630 | Q5LRY6 | Negative | 859021 - 860286 | 44471.5 |
| glutamate 5-kinase | shim_08640 | Q1GHC9 | Negative | 860368 - 861474 | 38564.4 |
| gtpase obg/cgta | shim_08650 | Q5LRY4 | Negative | 861462 - 862508 | 37523.6 |
| hypothetical protein | shim_08660 | Not Available | Negative | 862573 - 863112 | 19541.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
