Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-acetyltransferase | shim_08470 | P40882 | Positive | 844439 - 844966 | 18289.9 |
| phosphate regulon sensor protein phor | shim_08480 | P08400 | Positive | 845054 - 846085 | 38180.6 |
| phosphate-binding protein psts precursor | shim_08490 | Not Available | Positive | 846214 - 847224 | 35326.7 |
| phosphate transport system permease protein pstc | shim_08500 | P46339 | Positive | 847303 - 848763 | 51332.6 |
| phosphate transport system permease protein psta | shim_08510 | P0A627 | Positive | 848760 - 850088 | 47741.8 |
| phosphate import atp-binding protein pstb | shim_08520 | Q1GH74 | Positive | 850107 - 850904 | 29317.9 |
| hypothetical protein | shim_08530 | Q9X5E1 | Positive | 850919 - 851617 | 26229.8 |
| phosphate regulon transcriptional regulatory protein phob | shim_08540 | Q52990 | Positive | 851636 - 852325 | 25943.3 |
| transcriptional activator protein luxr | shim_08550 | Not Available | Positive | 852729 - 853496 | 28923.4 |
| elongation factor ts | shim_08560 | Q165Z4 | Negative | 853857 - 854732 | 30417.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
