Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| high-affinity branched-chain amino acid transport atp-binding protein livf | shim_08370 | Not Available | Negative | 834655 - 835482 | 29360.2 |
| lipopolysaccharide export system atp-binding protein lptb | shim_08380 | Q58663 | Negative | 835547 - 836329 | 28486.6 |
| leucine-specific-binding protein precursor | shim_08390 | Not Available | Negative | 836423 - 837610 | 39777.8 |
| soluble aldose sugar dehydrogenase ylii precursor | shim_08400 | P75804 | Positive | 837765 - 838871 | 40328.9 |
| hypothetical protein | shim_08410 | Not Available | Positive | 838817 - 839329 | 19642.6 |
| hth-type transcriptional regulator cdhr | shim_08420 | A0A0H2ZIC3 | Negative | 839330 - 840331 | 37636.0 |
| phospho-2-dehydro-3-deoxyheptonate aldolase | shim_08430 | A0A067XGX8 | Positive | 840496 - 841863 | 49939.4 |
| pas domain protein | shim_08440 | Not Available | Negative | 842017 - 842688 | 24691.6 |
| hypothetical protein | shim_08450 | P44726 | Positive | 842903 - 843793 | 32297.8 |
| guanylate kinase | shim_08460 | Q5LS25 | Positive | 843798 - 844439 | 24160.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
