Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase m15 | shim_08270 | P0AB08 | Negative | 823986 - 824648 | 24094.7 |
| murein l,d-transpeptidase | shim_08280 | P22525 | Positive | 824941 - 826548 | 59957.7 |
| udp-3-o-acylglucosamine n-acyltransferase | shim_08290 | Q5LS40 | Positive | 826581 - 827672 | 38295.7 |
| acyl carrier protein | shim_08300 | Not Available | Positive | 827702 - 827959 | 9000.46 |
| 3-oxoacyl-(acyl-carrier-protein) synthase 2 | shim_08310 | P72331 | Positive | 827996 - 829204 | 42352.5 |
| invasion associated locus b (ialb) protein | shim_08320 | Not Available | Negative | 829274 - 829870 | 20709.9 |
| aaa-like domain protein | shim_08330 | P39342 | Positive | 830324 - 831871 | 56275.8 |
| leucine/isoleucine/valine transporter permease subunit | shim_08340 | Q58666 | Negative | 831930 - 833279 | 47861.1 |
| high-affinity branched-chain amino acid transport system permease protein livh | shim_08350 | Not Available | Negative | 833276 - 834286 | 36798.4 |
| hypothetical protein | shim_08360 | Not Available | Negative | 834286 - 834651 | 12790.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
