Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fes cluster assembly protein sufb | shim_08170 | Q55790 | Positive | 815189 - 816712 | 56652.6 |
| hypothetical protein | shim_08180 | Q5LRV2 | Positive | 816733 - 817047 | 10793.8 |
| putative atp-dependent transporter sufc | shim_08190 | P77499 | Positive | 817093 - 817848 | 27444.3 |
| fes cluster assembly protein sufd | shim_08200 | P77689 | Positive | 817848 - 819134 | 47007.2 |
| hypothetical protein | shim_08210 | Not Available | Positive | 819134 - 819616 | 17692.4 |
| yip1 domain protein | shim_08220 | Not Available | Positive | 819616 - 820197 | 21210.8 |
| cysteine desulfurase | shim_08230 | Q9PDA6 | Positive | 820199 - 821419 | 43829.6 |
| Trna-arg | Not Available | Not Available | Positive | 821483 - 821559 | Not Available |
| hypothetical protein | shim_08250 | Not Available | Positive | 821617 - 822921 | 47942.3 |
| abc transporter transmembrane region | shim_08260 | Not Available | Positive | 822997 - 823950 | 34936.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
