Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug transporter emre | shim_08070 | P0AGC9 | Negative | 807119 - 807454 | 11977.3 |
| hypothetical protein | shim_08080 | Not Available | Negative | 807480 - 808109 | 22512.0 |
| isocitrate dehydrogenase (nadp) | shim_08090 | P50215 | Negative | 808224 - 809438 | 45415.5 |
| glycerophosphoryl diester phosphodiesterase | shim_08100 | P37965 | Positive | 809632 - 811452 | 64970.2 |
| hypothetical protein | shim_08110 | Not Available | Positive | 811445 - 811999 | 20147.5 |
| 5'-nucleotidase | shim_08120 | Not Available | Negative | 812003 - 812584 | 21671.5 |
| hypothetical protein | shim_08130 | Not Available | Negative | 812581 - 812829 | 9172.97 |
| alpha/beta hydrolase family protein | shim_08140 | Q9ZD73 | Negative | 812829 - 813485 | 24423.0 |
| hth-type transcriptional regulator iscr | shim_08150 | B7VJS5 | Positive | 813679 - 814113 | 15301.3 |
| cysteine desulfurase | shim_08160 | B8DZS1 | Positive | 814113 - 815165 | 36306.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
