Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inosine-5'-monophosphate dehydrogenase | shim_07970 | Q9KH33 | Positive | 793875 - 795323 | 50777.1 |
| ribosomal rna small subunit methyltransferase b | shim_07980 | A1JRZ3 | Positive | 795323 - 796480 | 41563.8 |
| blue-light-activated protein | shim_07990 | P0DOA0 | Positive | 796577 - 798886 | 82809.4 |
| hypothetical protein | shim_08000 | Not Available | Negative | 798879 - 799478 | 23428.1 |
| protein reca | shim_08010 | Q5LRU0 | Positive | 799685 - 800752 | 38261.9 |
| hypothetical protein | shim_08020 | Not Available | Positive | 800791 - 801300 | 18586.3 |
| alanine--trna ligase | shim_08030 | Q5LRU1 | Positive | 801396 - 804068 | 96286.3 |
| hypothetical protein | shim_08040 | Not Available | Positive | 804072 - 804359 | 10301.1 |
| amidohydrolase egtc | shim_08050 | P54004 | Positive | 804379 - 805158 | 28696.9 |
| gtp-binding protein typa/bipa | shim_08060 | O25225 | Negative | 805228 - 807048 | 66421.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
