Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna gyrase subunit a | shim_07870 | Q0BST5 | Negative | 780388 - 783132 | 101285.0 |
| hypothetical protein | shim_07880 | Not Available | Positive | 783357 - 784421 | 38700.9 |
| antilisterial bacteriocin subtilosin biosynthesis protein alba | shim_07890 | Not Available | Negative | 784418 - 785371 | 35434.9 |
| glucose-6-phosphate 1-dehydrogenase | shim_07900 | Not Available | Positive | 785472 - 787049 | 58753.9 |
| 6-phosphogluconolactonase | shim_07910 | Q989A3 | Positive | 787028 - 787720 | 24783.9 |
| glucose-6-phosphate isomerase | shim_07920 | Q5LRS9 | Positive | 787725 - 789317 | 56899.8 |
| Trna-gly | Not Available | Not Available | Positive | 789374 - 789447 | Not Available |
| carnitinyl-coa dehydratase | shim_07940 | O04469 | Negative | 789515 - 790231 | 26149.7 |
| hypothetical protein | shim_07950 | Not Available | Negative | 790313 - 791512 | 46026.2 |
| na(+)-translocating nadh-quinone reductase subunit f | shim_07960 | P0DX10 | Negative | 791587 - 793626 | 72106.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
