Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pseudouridine kinase | shim_07770 | Not Available | Negative | 771758 - 772651 | 31125.2 |
| thiamine-phosphate synthase | shim_07780 | Not Available | Negative | 772660 - 773283 | 22403.3 |
| hypothetical protein | shim_07790 | Not Available | Negative | 773363 - 773692 | 11640.3 |
| trna (cytidine/uridine-2'-o-)-methyltransferase trmj | shim_07800 | Not Available | Positive | 773825 - 774571 | 27784.4 |
| heme a synthase | shim_07810 | Q1GGZ8 | Positive | 774639 - 775790 | 42164.9 |
| thermostable carboxypeptidase 1 | shim_07820 | Q5SLM3 | Positive | 775807 - 777279 | 53893.5 |
| hypothetical protein | shim_07830 | Not Available | Negative | 777370 - 777795 | 15353.3 |
| chromosome initiation inhibitor | shim_07840 | Not Available | Negative | 777935 - 778825 | 33140.0 |
| hypothetical protein | shim_07850 | Not Available | Negative | 779082 - 779531 | 15885.6 |
| hypothetical protein | shim_07860 | Not Available | Negative | 779907 - 780266 | 12955.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
